I checked and I did not have any DSP's running but I did have EQ and preamp turned on. Preamp was at 2 and EQ was in a normal/standard curve. Not sure if that is what was causing it or not because it never show's it clipping coming into my mixer or going out but I went ahead and turned it off. I'm assuming by not using the EQ/PreAmp feature that it just flatlines the EQ across the board?
Based on your description, it would be a miracle if you weren't clipping with a pre-amp of +2 set and what I'm guessing was a "standard curve" going only above 0, bringing the input you'd already raised overall by 2db up by several additional decibels per frequency range.
If you're going to EQ (Top Tip: You shouldn't - mastering engineers mostly know what they're doing) the highest level should be 0 with the preamp to compensate or, at worst, compensate anything going above 0 with something of equal sonic intensity going the same level below 0.
It wouldn't show the clipping at your mixer because your sound
output was set appropriately, but you were clipping the
input - what you were sending to WASAPI. You could output -3db all day long, but if what you're inputting is clipped it's going to be clipped.
Played around the tags a bit as its not something I dug much into it. Looks like many of my files were missing tags but they were mainly things like year/album/etc... Wasn't able to see which had replay gain tags on them but when I highlight all my files and click on 'Analyze Volume' some of the tracks are already checked and some are not. Am I assuming correctly that the ones already checked have gain tags and those that don't have check marks have no gain tag?
That's backwards. The check mark is a selector. The checked ones are selected to be scanned because they're missing either album gain, track gain or both. Unchecked have both so they're not selected be scanned.
As I said in my original reply, the easiest way to see what's scanned and what's not is to display the "Track Gain" field in Tracks view on your Music tab on the main panel. For individual files, you can right click->Edit and view the "Properties" tab.
http://musicbee.wikia.com/wiki/Analyze_VolumeIs there anyway to remove ALL the volume/gain tags on ALL my files at the same time and start from new? I can either leave them off and just adjust volume/gain live from my mixer or I can just rescan them all through MusicBee adding those gain tags as a group but only do it once this time and just do it individually when I add new music. Thoughts?
The quickest way is to select all of your files and then go to Tools->Restore Original Volume. This will erase all ReplayGain tags.
http://musicbee.wikia.com/wiki/Analyze_Volume