I believe you are correct in that it follows that setting.
Yet I would argue that that setting is a global setting where you do want to specify how your collection is sorted and presented.
For normalizing it would probably be logical as default to follow that global setting, but it would be very convenient if you could overrule it with a simple check-box.
Currently you would have to have the consequences of this possible problem in the back of your head when normalizing, (you won't be warned if album gain was not applied) and go to configuration settings for a temporary adjustment, and afterwards change it back again.